If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ), 'gf_id' => 'HOM05D000939', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000939' ), 'data_identifier' => 'HOM05D000939', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000939', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31330' => 'bna', 'A03p27440' => 'bna', 'A03p56510' => 'bna', 'A03p63420' => 'bna', 'A05p33390' => 'bna', 'A06p16650' => 'bna', 'A07p07660' => 'bna', 'A07p07670' => 'bna', 'A08p06080' => 'bna', 'A09p20020' => 'bna', 'A10p06770' => 'bna', 'Aa31LG6G6420' => 'aar', 'Aa31LG7G13570' => 'aar', 'Aa31LG9G12920' => 'aar', 'Aa31sc1464G10' => 'aar', 'Aa31sc29G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2123' => 'aag', 'Actinidia01814' => 'ach', 'Actinidia01815' => 'ach', 'Actinidia06670' => 'ach', 'Actinidia08989' => 'ach', 'Actinidia12047' => 'ach', 'Actinidia12862' => 'ach', 'Actinidia14982' => 'ach', 'Actinidia18019' => 'ach', 'Actinidia20378' => 'ach', 'Actinidia20547' => 'ach', 'Actinidia21676' => 'ach', 'Actinidia24745' => 'ach', 'Actinidia32734' => 'ach', 'Actinidia34540' => 'ach', 'Actinidia36485' => 'ach', 'Ah.01g021570' => 'amhyb', 'Ah.01g023450' => 'amhyb', 'Ah.03g145290' => 'amhyb', 'Ah.03g145300' => 'amhyb', 'Ah.09g231060' => 'amhyb', 'AL1G53110' => 'aly', 'AL3G28790' => 'aly', 'AL3G40170' => 'aly', 'AL3G40180' => 'aly', 'AL4G40350' => 'aly', 'AL7G16030' => 'aly', 'AL8G18090' => 'aly', 'Aqoxy2G01859' => 'aox', 'Aqoxy5G01210' => 'aox', 'Aqoxy6G01840' => 'aox', 'Aqoxy6G02994' => 'aox', 'Aqoxy7G01630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18DP1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BTA48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3NC18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EL0B9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7DDS65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMW7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH763L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRD89C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6DE7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPW8SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3CGZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z74RH1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASQ2Z' => 'arhy', 'AT1G45688' => 'ath', 'AT2G41990' => 'ath', 'AT3G24600' => 'ath', 'AT3G24605' => 'ath', 'AT4G35170' => 'ath', 'AT5G42860' => 'ath', 'ATR0315G036' => 'atr', 'ATR0584G117' => 'atr', 'ATR0772G153' => 'atr', 'Atru.chr1.3325' => 'acertr', 'Atru.chr13.716' => 'acertr', 'Atru.chr3.310' => 'acertr', 'Atru.chr5.3485' => 'acertr', 'AUR62001918' => 'cqu', 'AUR62003890' => 'cqu', 'AUR62009984' => 'cqu', 'AUR62010970' => 'cqu', 'AUR62011645' => 'cqu', 'AUR62012973' => 'cqu', 'AUR62016473' => 'cqu', 'AUR62021479' => 'cqu', 'AUR62022488' => 'cqu', 'AUR62036630' => 'cqu', 'BcaB01g02956' => 'bca', 'BcaB04g17560' => 'bca', 'BcaB06g25703' => 'bca', 'BcaB06g26665' => 'bca', 'BcaB06g26666' => 'bca', 'BcaB07g31040' => 'bca', 'BcaB07g33868' => 'bca', 'BcaC01g04856' => 'bca', 'BcaC04g21966' => 'bca', 'BcaC05g28912' => 'bca', 'BcaC06g35731' => 'bca', 'BcaC06g35732' => 'bca', 'BcaC06g35733' => 'bca', 'BcaC06g35734' => 'bca', 'BcaC06g35735' => 'bca', 'BcaC07g37256' => 'bca', 'BcaC08g42915' => 'bca', 'BcaNung02381' => 'bca', 'BcaNung04610' => 'bca', 'BolC3t15635H' => 'bol', 'BolC4t23537H' => 'bol', 'BolC5t33787H' => 'bol', 'BolC6t35283H' => 'bol', 'BolC7t41628H' => 'bol', 'BolC7t41629H' => 'bol', 'BolC7t44004H' => 'bol', 'BolC7t46527H' => 'bol', 'BolC8t47528H' => 'bol', 'BolC9t55439H' => 'bol', 'BraA01t03258Z' => 'bra', 'BraA03t11956Z' => 'bra', 'BraA03t15413Z' => 'bra', 'BraA05t22164Z' => 'bra', 'BraA06t24772Z' => 'bra', 'BraA06t24773Z' => 'bra', 'BraA07t28250Z' => 'bra', 'BraA07t28559Z' => 'bra', 'BraA07t28560Z' => 'bra', 'BraA08t32608Z' => 'bra', 'BraA09t37611Z' => 'bra', 'BraA10t42937Z' => 'bra', 'C03p33090' => 'bna', 'C05p50390' => 'bna', 'C06p01540' => 'bna', 'C07p11550' => 'bna', 'C07p11560' => 'bna', 'C07p34730' => 'bna', 'C07p61020' => 'bna', 'C08p06860' => 'bna', 'C09p25400' => 'bna', 'CAN.G1030.18' => 'can', 'CAN.G370.52' => 'can', 'CAN.G438.17' => 'can', 'CAN.G656.16' => 'can', 'CANSAT01G1022' => 'cansat', 'CANSAT25G0388' => 'cansat', 'CANSAT25G2585' => 'cansat', 'CANSAT56G0807' => 'cansat', 'CANSAT56G3392' => 'cansat', 'CARHR036510' => 'chi', 'CARHR100880' => 'chi', 'CARHR100890' => 'chi', 'CARHR115950' => 'chi', 'CARHR181280' => 'chi', 'CARHR243490' => 'chi', 'Carub.0001s3577' => 'cru', 'Carub.0003s1585' => 'cru', 'Carub.0003s2498' => 'cru', 'Carub.0003s2499' => 'cru', 'Carub.0004s2432' => 'cru', 'Carub.0007s0513' => 'cru', 'Carub.0008s0606' => 'cru', 'Ca_01126_v3' => 'car', 'Ca_17233_v3' => 'car', 'Ca_18989_v3' => 'car', 'Ca_22157_v3' => 'car', 'Ca_25463_v3' => 'car', 'Ca_25538_v3' => 'car', 'Cc04_g03110' => 'ccan', 'Cc06_g09810' => 'ccan', 'Cc07_g06090' => 'ccan', 'Cc09_g10480' => 'ccan', 'Cc10_g04560' => 'ccan', 'CDE02G0648' => 'cde', 'CDE05G0107' => 'cde', 'CDE05G1011' => 'cde', 'CDE05G1160' => 'cde', 'CDE05G2323' => 'cde', 'CDE08G1466' => 'cde', 'CDE08G1509' => 'cde', 'Cfa002088' => 'cfa', 'Cfa003253' => 'cfa', 'Cfa004031' => 'cfa', 'Cfa018080' => 'cfa', 'Ciclev10001851m.g' => 'ccl', 'Ciclev10009029m.g' => 'ccl', 'Ciclev10026158m.g' => 'ccl', 'Ciclev10027302m.g' => 'ccl', 'Ciclev10028720m.g' => 'ccl', 'CiPaw.01G017200' => 'cil', 'CiPaw.01G236500' => 'cil', 'CiPaw.01G236700' => 'cil', 'CiPaw.03G230300' => 'cil', 'CiPaw.05G087700' => 'cil', 'CiPaw.15G054900' => 'cil', 'ClCG01G016880' => 'cla', 'ClCG02G003670' => 'cla', 'ClCG02G003680' => 'cla', 'ClCG06G008650' => 'cla', 'ClCG08G016040' => 'cla', 'ClCG09G001990' => 'cla', 'COL.COLO4_11436' => 'col', 'COL.COLO4_17992' => 'col', 'COL.COLO4_26534' => 'col', 'COL.COLO4_30422' => 'col', 'COL.COLO4_34845' => 'col', 'Cpa.g.sc2033.2' => 'cpa', 'Cpa.g.sc23.93' => 'cpa', 'Cpa.g.sc49.34' => 'cpa', 'Cpa.g.sc55.139' => 'cpa', 'Cpa.g.sc98.8' => 'cpa', 'CsaV3_1G025460' => 'csa', 'CsaV3_2G026590' => 'csa', 'CsaV3_6G043330' => 'csa', 'CsaV3_7G001460' => 'csa', 'CsaV3_7G033360' => 'csa', 'CSS0009205' => 'camsi', 'CSS0020433' => 'camsi', 'CSS0020877' => 'camsi', 'CSS0021830' => 'camsi', 'CSS0035697' => 'camsi', 'DCAR_007567' => 'dca', 'DCAR_010102' => 'dca', 'DCAR_012783' => 'dca', 'DCAR_016215' => 'dca', 'DCAR_019442' => 'dca', 'DCAR_022411' => 'dca', 'DCAR_025741' => 'dca', 'DCAR_026331' => 'dca', 'Dinv14147' => 'din', 'Dinv29995' => 'din', 'Dinv30489' => 'din', 'Dinv35942' => 'din', 'Dinv36645' => 'din', 'Dinv38029' => 'din', 'Dinv39302' => 'din', 'Dinv41616' => 'din', 'Duzib041G0442' => 'dzi', 'Duzib116G0133' => 'dzi', 'Duzib132G0570' => 'dzi', 'Duzib168G0155' => 'dzi', 'Duzib187G0677' => 'dzi', 'Duzib192G0437' => 'dzi', 'Duzib235G0977' => 'dzi', 'Duzib248G0145' => 'dzi', 'Duzib264G0236' => 'dzi', 'ECA232G3337' => 'eca', 'ECA232G4977' => 'eca', 'ECA238G0126' => 'eca', 'ECA246G1988' => 'eca', 'ECA246G3048' => 'eca', 'EL10Ac6g15733' => 'bvu', 'EL10Ac8g18459' => 'bvu', 'EL10Ac9g21305' => 'bvu', 'EL10Ac9g22023' => 'bvu', 'EL10As7g23745' => 'bvu', 'Eucgr.C03816' => 'egr', 'Eucgr.F00213' => 'egr', 'Eucgr.F03033' => 'egr', 'Eucgr.H01684' => 'egr', 'Eucgr.H02051' => 'egr', 'Eucgr.I01480' => 'egr', 'FAN15G1063' => 'fan', 'FAN15G1814' => 'fan', 'FAN19G1769' => 'fan', 'FAN19G2094' => 'fan', 'FAN23G2335' => 'fan', 'FAN24G0736' => 'fan', 'FAN24G1977' => 'fan', 'FAN26G0467' => 'fan', 'FAN26G1115' => 'fan', 'FAN27G3519' => 'fan', 'FAN28G0181' => 'fan', 'FAN28G2167' => 'fan', 'FvH4_1g04500' => 'fve', 'FvH4_1g16160' => 'fve', 'FvH4_2g16020' => 'fve', 'FvH4_2g34240' => 'fve', 'FvH4_6g31661' => 'fve', 'Glyma.05G094300' => 'gma', 'Glyma.05G242600' => 'gma', 'Glyma.07G084600' => 'gma', 'Glyma.07G099500' => 'gma', 'Glyma.09G179400' => 'gma', 'Glyma.09G192300' => 'gma', 'Glyma.11G097100' => 'gma', 'Glyma.12G023200' => 'gma', 'Glyma.13G357566' => 'gma', 'Glyma.13G357632' => 'gma', 'Glyma.15G015800' => 'gma', 'Glyma.17G172900' => 'gma', 'Gohir.A01G172200' => 'ghi', 'Gohir.A03G076300' => 'ghi', 'Gohir.A03G206800' => 'ghi', 'Gohir.A04G132418' => 'ghi', 'Gohir.A05G024000' => 'ghi', 'Gohir.A05G203700' => 'ghi', 'Gohir.A06G019600' => 'ghi', 'Gohir.A10G081100' => 'ghi', 'Gohir.A11G192960' => 'ghi', 'Gohir.A12G072200' => 'ghi', 'Gohir.D01G163200' => 'ghi', 'Gohir.D02G091000' => 'ghi', 'Gohir.D02G228200' => 'ghi', 'Gohir.D04G169433' => 'ghi', 'Gohir.D05G025500' => 'ghi', 'Gohir.D05G206800' => 'ghi', 'Gohir.D06G018000' => 'ghi', 'Gohir.D10G070300' => 'ghi', 'Gohir.D11G199900' => 'ghi', 'Gohir.D12G070100' => 'ghi', 'Gorai.002G202400' => 'gra', 'Gorai.005G101900' => 'gra', 'Gorai.005G256100' => 'gra', 'Gorai.007G214000' => 'gra', 'Gorai.008G077100' => 'gra', 'Gorai.009G025600' => 'gra', 'Gorai.009G213300' => 'gra', 'Gorai.010G020900' => 'gra', 'Gorai.011G074600' => 'gra', 'Gorai.012G157600' => 'gra', 'GSVIVG01009475001' => 'vvi', 'GSVIVG01015376001' => 'vvi', 'GSVIVG01017064001' => 'vvi', 'GSVIVG01023904001' => 'vvi', 'HanXRQChr02g0048771' => 'han', 'HanXRQChr03g0061851' => 'han', 'HanXRQChr05g0150771' => 'han', 'HanXRQChr07g0188031' => 'han', 'HanXRQChr09g0239641' => 'han', 'HanXRQChr09g0263711' => 'han', 'HanXRQChr09g0275161' => 'han', 'HanXRQChr14g0449071' => 'han', 'HanXRQChr15g0477831' => 'han', 'HanXRQChr15g0490281' => 'han', 'HanXRQChr15g0490291' => 'han', 'HanXRQChr16g0500901' => 'han', 'HanXRQChr17g0543801' => 'han', 'Haze_02060' => 'cav', 'Haze_15386' => 'cav', 'Haze_16369' => 'cav', 'Haze_16370' => 'cav', 'Haze_18032' => 'cav', 'Haze_25761' => 'cav', 'Hma1.2p1_0360F.1_g135650' => 'hma', 'Hma1.2p1_0634F.1_g192900' => 'hma', 'Hma1.2p1_0659F.1_g197280' => 'hma', 'Hma1.2p1_2022F.1_g311360' => 'hma', 'Hma1.2p1_3266F.1_g334700' => 'hma', 'HPP92_000252' => 'vpl', 'HPP92_003496' => 'vpl', 'HPP92_021680' => 'vpl', 'HPP92_026893' => 'vpl', 'Hund06625' => 'sun', 'Hund07514' => 'sun', 'Hund16315' => 'sun', 'Hund24041' => 'sun', 'Lalb_Chr00c02g0404011' => 'lal', 'Lalb_Chr01g0001221' => 'lal', 'Lalb_Chr03g0024621' => 'lal', 'Lalb_Chr05g0221951' => 'lal', 'Lalb_Chr05g0226511' => 'lal', 'Lalb_Chr11g0069561' => 'lal', 'Lalb_Chr14g0370871' => 'lal', 'Lalb_Chr14g0373281' => 'lal', 'Lalb_Chr16g0387261' => 'lal', 'Lalb_Chr22g0351331' => 'lal', 'Lalb_Chr22g0352761' => 'lal', 'Lalb_Chr22g0353281' => 'lal', 'Lj2g0008767' => 'lja', 'Lj2g0019175' => 'lja', 'Lj3g0006425' => 'lja', 'Lj3g0016168' => 'lja', 'Lj4A150T39' => 'lonja', 'Lj4A770T65' => 'lonja', 'Lj4g0000822' => 'lja', 'Lj4g0022382' => 'lja', 'Lj5A173T70' => 'lonja', 'Lj5A58T69' => 'lonja', 'Lj7C652T19' => 'lonja', 'Lsat_1_v5_gn_2_84821' => 'lsa', 'Lsat_1_v5_gn_3_47181' => 'lsa', 'Lsat_1_v5_gn_4_101960' => 'lsa', 'Lsat_1_v5_gn_4_164841' => 'lsa', 'Lsat_1_v5_gn_6_112181' => 'lsa', 'Lsat_1_v5_gn_6_117721' => 'lsa', 'Lsat_1_v5_gn_7_40721' => 'lsa', 'Manes.03G021700' => 'mes', 'Manes.04G068700' => 'mes', 'Manes.04G129100' => 'mes', 'Manes.05G175200' => 'mes', 'Manes.11G100400' => 'mes', 'Manes.12G103700' => 'mes', 'Manes.13G123300' => 'mes', 'Manes.18G038901' => 'mes', 'Mapoly0001s0107' => 'mpo', 'Mapoly0003s0293' => 'mpo', 'MBI04_g19160_MAGBIO' => 'mbi', 'MBI04_g19161_MAGBIO' => 'mbi', 'MBI04_g29971_MAGBIO' => 'mbi', 'MBI05_g32370_MAGBIO' => 'mbi', 'MBI06_g18692_MAGBIO' => 'mbi', 'MBI16_g18336_MAGBIO' => 'mbi', 'MBI17_g25968_MAGBIO' => 'mbi', 'MBI17_g36839_MAGBIO' => 'mbi', 'MBI19_g37618_MAGBIO' => 'mbi', 'MD02G1044800' => 'mdo', 'MD02G1173700' => 'mdo', 'MD05G1129000' => 'mdo', 'MD08G1098400' => 'mdo', 'MD09G1210000' => 'mdo', 'MD10G1132300' => 'mdo', 'MD15G1080900' => 'mdo', 'MD15G1183300' => 'mdo', 'MD17G1192000' => 'mdo', 'Medtr0154s0010' => 'mtr', 'Medtr2g101870' => 'mtr', 'Medtr3g037650' => 'mtr', 'Medtr4g075730' => 'mtr', 'Medtr4g094800' => 'mtr', 'Medtr6g081930' => 'mtr', 'Medtr6g087880' => 'mtr', 'Medtr7g033535' => 'mtr', 'Medtr8g086610' => 'mtr', 'Medtr8g106580' => 'mtr', 'MELO3C007566.2' => 'cme', 'MELO3C010846.2' => 'cme', 'MELO3C013305.2' => 'cme', 'MELO3C024247.2' => 'cme', 'MELO3C025354.2' => 'cme', 'Migut.B00034' => 'egut', 'Migut.C00566' => 'egut', 'Migut.I00948' => 'egut', 'Migut.K00509' => 'egut', 'Migut.K00769' => 'egut', 'Migut.N02721' => 'egut', 'MSTRG.11062' => 'ama', 'MSTRG.1355' => 'ama', 'MSTRG.15384' => 'ama', 'MSTRG.19957' => 'ama', 'MSTRG.22252' => 'ama', 'MSTRG.22668' => 'ama', 'MSTRG.25081' => 'ama', 'MSTRG.9464' => 'ama', 'Nitab4.5_0000009g0530' => 'nta', 'Nitab4.5_0000097g0170' => 'nta', 'Nitab4.5_0000287g0140' => 'nta', 'Nitab4.5_0001274g0050' => 'nta', 'Nitab4.5_0001315g0210' => 'nta', 'Nitab4.5_0002029g0020' => 'nta', 'Nitab4.5_0003519g0010' => 'nta', 'Nitab4.5_0007949g0030' => 'nta', 'Nitab4.5_0008314g0070' => 'nta', 'Nitab4.5_0008909g0030' => 'nta', 'Nn1g04814' => 'nnu', 'Nn2g11710' => 'nnu', 'Nn3g17528' => 'nnu', 'Nn4g22081' => 'nnu', 'Nn5g27646' => 'nnu', 'Nn5g30264' => 'nnu', 'Nn6g31835' => 'nnu', 'Nn7g36216' => 'nnu', 'Nn8g39139' => 'nnu', 'Oeu031964.1' => 'oeu', 'Oeu057276.1' => 'oeu', 'Oeu064586.1' => 'oeu', 'Os01g0228500' => 'osa', 'Os02g0667600' => 'osa', 'Os04g0430600' => 'osa', 'Os04g0689500' => 'osa', 'Os06g0163300' => 'osa', 'Peaxi162Scf00015g00039' => 'pax', 'Peaxi162Scf00078g01223' => 'pax', 'Peaxi162Scf00450g00216' => 'pax', 'Peaxi162Scf00503g00112' => 'pax', 'Peaxi162Scf00917g00512' => 'pax', 'Peaxi162Scf01113g00011' => 'pax', 'PGR083G2614' => 'pgr', 'PGR102G0568' => 'pgr', 'PGR102G0679' => 'pgr', 'PGR142G0581' => 'pgr', 'PGSC0003DMG400004015' => 'stu', 'PGSC0003DMG400007960' => 'stu', 'PGSC0003DMG400032803' => 'stu', 'PGSC0003DMG402002623' => 'stu', 'Phvul.002G326000' => 'pvu', 'Phvul.003G243200' => 'pvu', 'Phvul.004G153000' => 'pvu', 'Phvul.004G165600' => 'pvu', 'Phvul.005G168300' => 'pvu', 'Phvul.011G025200' => 'pvu', 'Potri.001G183600' => 'ptr', 'Potri.002G124600' => 'ptr', 'Potri.003G052900' => 'ptr', 'Potri.004G180900' => 'ptr', 'Potri.006G160100' => 'ptr', 'Potri.007G045000' => 'ptr', 'Potri.009G140600' => 'ptr', 'Potri.014G026800' => 'ptr', 'Pp3c10_5080' => 'ppa', 'Pp3c14_4400' => 'ppa', 'Pp3c16_7260' => 'ppa', 'Prupe.1G433700' => 'ppe', 'Prupe.3G068000' => 'ppe', 'Prupe.7G132000' => 'ppe', 'Prupe.7G232800' => 'ppe', 'Prupe.8G173100' => 'ppe', 'Psat1g044000' => 'psa', 'Psat4g086480' => 'psa', 'Psat5g298240' => 'psa', 'Psat7g005720' => 'psa', 'Psat7g178800' => 'psa', 'PSO170G2516' => 'pso', 'PSO210G7754' => 'pso', 'PSO541G1875' => 'pso', 'PSO675G3064' => 'pso', 'PSO782G1507' => 'pso', 'PSO832G0256' => 'pso', 'QL02p004444' => 'qlo', 'QL05p022074' => 'qlo', 'QL06p041165' => 'qlo', 'QL11p053455' => 'qlo', 'RcHm_v2.0_Chr2g0090181' => 'rch', 'RcHm_v2.0_Chr2g0105841' => 'rch', 'RcHm_v2.0_Chr2g0138301' => 'rch', 'RcHm_v2.0_Chr2g0138731' => 'rch', 'RcHm_v2.0_Chr2g0138741' => 'rch', 'RcHm_v2.0_Chr6g0279601' => 'rch', 'RcHm_v2.0_Chr6g0308181' => 'rch', 'Rhsim01G0097200' => 'rsi', 'Rhsim01G0098100' => 'rsi', 'Rhsim07G0227300' => 'rsi', 'Rhsim07G0227700' => 'rsi', 'Rhsim08G0223000' => 'rsi', 'Rhsim10G0116100' => 'rsi', 'Rhsim11G0195500' => 'rsi', 'Rhsim12G0199900' => 'rsi', 'Sabra01G0144200' => 'sbr', 'Sabra02G0097800' => 'sbr', 'Sabra03G0026600' => 'sbr', 'Sabra04G0121600' => 'sbr', 'Sabra07G0039900' => 'sbr', 'Sabra09G0109500' => 'sbr', 'Sabra14G0018300' => 'sbr', 'SalBow1G5068' => 'sbo', 'SalBow1G7710' => 'sbo', 'SalBow2G0204' => 'sbo', 'SalBow5G2204' => 'sbo', 'Sc03g0001650' => 'sci', 'Sc08g0002600' => 'sci', 'Sc08g0007490' => 'sci', 'Sc12g0009440' => 'sci', 'Sc15g0006020' => 'sci', 'Sed0003141' => 'sed', 'Sed0004097' => 'sed', 'Sed0004169' => 'sed', 'Sed0013029' => 'sed', 'Sed0015428' => 'sed', 'Sed0027678' => 'sed', 'SEGI_01191' => 'sgi', 'SEGI_04621' => 'sgi', 'SGA_v2.0_scaffold10G05116' => 'sas', 'SGA_v2.0_scaffold451G51812' => 'sas', 'SGA_v2.0_scaffold58G20330' => 'sas', 'SGA_v2.0_scaffold5G02563' => 'sas', 'SGA_v2.0_scaffold69G23366' => 'sas', 'SHI05788' => 'shi', 'SHI08257' => 'shi', 'SMO364G0248' => 'smo', 'SMO367G0469' => 'smo', 'Solyc02g091000.4' => 'sly', 'Solyc03g120710.2' => 'sly', 'Solyc04g078750.3' => 'sly', 'Solyc11g042880.3' => 'sly', 'Solyc11g042890.2' => 'sly', 'Sopen02g035650' => 'spe', 'Sopen03g039530' => 'spe', 'Sopen04g032350' => 'spe', 'Sopen11g019270' => 'spe', 'Sp1g34160' => 'spa', 'Sp2g07560' => 'spa', 'Sp3g14470' => 'spa', 'Sp3g22380' => 'spa', 'Sp7g32930' => 'spa', 'TAR376G0755' => 'tar', 'TAR381G0179' => 'tar', 'TAR381G1178' => 'tar', 'TAR383G1040' => 'tar', 'TAR624G1137' => 'tar', 'TAR625G0582' => 'tar', 'TAR626G1084' => 'tar', 'THA.LOC104802214' => 'tha', 'THA.LOC104804214' => 'tha', 'THA.LOC104809106' => 'tha', 'THA.LOC104812578' => 'tha', 'THA.LOC104814169' => 'tha', 'THA.LOC104819664' => 'tha', 'THA.LOC109116493' => 'tha', 'Thecc.01G058000' => 'tca', 'Thecc.02G051800' => 'tca', 'Thecc.06G091500' => 'tca', 'Thecc.08G004600' => 'tca', 'Thecc.09G108400' => 'tca', 'Thecc.09G108600' => 'tca', 'Thhalv10000260m.g' => 'esa', 'Thhalv10002796m.g' => 'esa', 'Thhalv10002953m.g' => 'esa', 'Thhalv10011627m.g' => 'esa', 'Thhalv10021190m.g' => 'esa', 'Thhalv10025836m.g' => 'esa', 'TPR.G10038' => 'tpr', 'TPR.G11950' => 'tpr', 'TPR.G12819' => 'tpr', 'TPR.G21975' => 'tpr', 'TPR.G37246' => 'tpr', 'TPR.G38543' => 'tpr', 'TPR.G39890' => 'tpr', 'TWI09G0616' => 'twi', 'TWI12G1023' => 'twi', 'TWI18G1077' => 'twi', 'TWI34G0159' => 'twi', 'TWI56G0664' => 'twi', 'TWI79G1088' => 'twi', 'unitig_0.g2734' => 'ugi', 'unitig_21.g20849' => 'ugi', 'unitig_21.g20850' => 'ugi', 'unitig_32.g10766' => 'ugi', 'unitig_46.g17932' => 'ugi', 'unitig_46.g17933' => 'ugi', 'unitig_46.g18556' => 'ugi', 'unitig_578.g16316' => 'ugi', 'vmacro02306' => 'vma', 'vmacro04443' => 'vma', 'vmacro05304' => 'vma', 'vmacro16966' => 'vma', 'vmacro18894' => 'vma', 'vmacro20710' => 'vma', 'VMungo0251G2920' => 'vmu', 'VMungo0251G3370' => 'vmu', 'VMungo0464G0991' => 'vmu', 'VMungo0464G2131' => 'vmu', 'VMungo1080G0429' => 'vmu', 'VMungo1127G0675' => 'vmu', 'Zm00001eb076240' => 'zma', 'Zm00001eb076260' => 'zma', 'Zm00001eb082820' => 'zma', 'Zm00001eb271440' => 'zma', 'Zm00001eb375730' => 'zma', 'Zm00001eb422500' => 'zma' ) $gf_id = 'HOM05D000939' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000939' ) $data_identifier = 'HOM05D000939' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422500' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1